Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs78756546 chr6:151424522 G/T 0 119 38.13 55.1 4.13 KM Plot
THYM rs78882249 chr8:131731948 C/T 0 119 42.9 27.2 2.9 KM Plot
THYM rs78899443 chr12:121609905 CTGCCTGCCTCGGCCTCCCAAAG/C 1.87E-5 118 46.6 46.27 24.87 KM Plot
THYM rs78903723 chr7:846983 G/C 0.000116 114 46.6 22.5 25.47 KM Plot
THYM rs78913308 chr11:20027477 A/G 3.35E-6 118 42.73 27.1 13.75 KM Plot
THYM rs78925361 chr4:70088439 C/T 4.7E-13 119 41.77 35 6 KM Plot
THYM rs78946830 chr5:149872650 C/G 1.77E-8 117 41.77 35.13 12.63 KM Plot
THYM rs78973112 chr4:70063309 C/T 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs79002758 chr8:39937823 A/G 0.000101 118 38.83 54.18 28.43 KM Plot
THYM rs79030845 chr4:70060073 C/G 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs7909414 chr10:90754744 C/T 1.72E-12 114 6 49.87 38.83 KM Plot
THYM rs79125962 chr4:115599801 T/C 0 118 38.33 44.58 4.13 KM Plot
THYM rs79179226 chr2:10929415 A/G 0.000177 118 41.77 38.33 62.72 KM Plot
THYM rs79209947 chr4:70288343 T/C 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs79215887 chr4:70039712 A/T 7.82E-13 117 39.75 42.3 6 KM Plot